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Transcriptome profile of rat genes in bone marrow-derived macrophages at different activation statuses by RNA-sequencing

机译:RNA测序在不同活化状态下骨髓衍生巨噬细胞大鼠基因的转录组谱

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摘要

The underlying mechanisms of macrophage polarization have been detected by genome-wide transcriptome analysis in a variety of mammals. However, the transcriptome profile of rat genes in bone marrow-derived macrophages (BMM) at different activation statuses has not been reported. Therefore, we performed RNA-Sequencing to identify gene expression signatures of rat BMM polarized in vitro with different stimuli. The differentially expressed genes (DEGs) among unactivated (M0), classically activated pro-inflammatory (M1), and alternatively activated anti-inflammatory macrophages (M2) were analyzed by using Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis. In this study, not only we have identified the changes of global gene expression in rat M0, M1 and M2, but we have also made clear systematically the key genes and signaling pathways in the differentiation process of M0 to M1 and M2. These will provide a foundation for future researches of macrophage polarization.
机译:通过各种哺乳动物的基因组转录组分析检测了巨噬细胞极化的潜在机制。然而,尚未报道在不同活化状态下骨髓衍生的巨噬细胞(BMM)中的大鼠基因的转录组曲线。因此,我们进行了RNA测序以鉴定不同刺激体外大鼠BMM偏振的基因表达特征。通过使用基因本体和基因组富集分析,通过使用基因本体和基因组富集分析来分析未致死的(M0),经典活化的促炎(M1)和替代活化的抗炎巨噬细胞(M2)中的差异表达基因(DEGS)。在这项研究中,不仅我们已经确定了大鼠M0,M1和M2中的全局基因表达的变化,但我们还在M0至M1和M2的分化过程中系统地清楚地清楚了。这些将为未来的巨噬细胞极化研究提供基础。

著录项

  • 来源
    《Genomics》 |2019年第4期|共11页
  • 作者单位

    Bengbu Med Coll Clin Lab Affiliated Hosp 1 Bengbu 233004 Anhui Peoples R China;

    Bengbu Med Coll Clin Lab Affiliated Hosp 1 Bengbu 233004 Anhui Peoples R China;

    Bengbu Med Coll Clin Lab Affiliated Hosp 1 Bengbu 233004 Anhui Peoples R China;

    Bengbu Med Coll Clin Lab Affiliated Hosp 1 Bengbu 233004 Anhui Peoples R China;

    Bengbu Med Coll Dept Immunol Bengbu 233030 Anhui Peoples R China;

    Bengbu Med Coll Clin Lab Affiliated Hosp 1 Bengbu 233004 Anhui Peoples R China;

    Bengbu Med Coll Affiliated Hosp 1 Anhui Key Lab Tissue Transplantat 287 Chang Huai Rd Bengbu;

    Bengbu Med Coll Affiliated Hosp 1 Anhui Key Lab Tissue Transplantat 287 Chang Huai Rd Bengbu;

    Bengbu Med Coll Clin Lab Affiliated Hosp 1 Bengbu 233004 Anhui Peoples R China;

    Bengbu Med Coll Clin Lab Affiliated Hosp 1 Bengbu 233004 Anhui Peoples R China;

  • 收录信息
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 医学遗传学;
  • 关键词

    Sprague-Dawley rats (RRID:RGD_70508); Bone marrow-derived macrophages; RNA-Seq; Pathway analysis; GO enrichment;

    机译:Sprague-Dawley大鼠(RRID:RGD_70508);骨髓衍生的巨噬细胞;RNA-SEQ;途径分析;致富;

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