A TUTORIAL OF RECENT DEVELOPMENTS IN THE SEEDING OF LOCAL ALIGNMENT

Daniel G. Brown; Ming Li; Bin Ma

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A TUTORIAL OF RECENT DEVELOPMENTS IN THE SEEDING OF LOCAL ALIGNMENT

机译：局部对准播种的最新发展课程

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摘要

We review recent results on local alignment. We begin with a review of classical methods and early heuristic methods, and then focus on more recent work on the seeding of local alignment. We show that these techniques give a vast improvement in both sensitivity and specificity over previous methods, and can achieve sensitivity at the level of classical algorithms while requiring orders of magnitude less runtime.

机译：我们审查最近的局部对齐结果。我们从审查古典方法和早期启发式方法的审查，然后专注于更新的局部对齐种子的工作。我们表明，这些技术对先前方法的敏感性和特异性来说显而易见的，并且可以在经典算法水平上实现灵敏度，同时需要较少的运行时较少的顺序。

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《Journal of Bioinformatics and Computational Biology》 |2004年第4期|共24页
作者
Daniel G. Brown; Ming Li; Bin Ma;
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作者单位

Department of Computer Science University of Waterloo Waterloo ON Canada N2L 3G1 Canada;

Department of Computer Science University of Waterloo Waterloo ON Canada N2L 3G1 Canada;

Department of Computer Science University of Western Ontario London ON Canada N6A 5B7 Canada;

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原文格式 PDF
正文语种 eng
中图分类细胞生物学;
关键词
Sequence alignment algorithms; homology search; spaced seeds;

机译：序列对准算法;同源性搜索;间隔的种子;

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专利

1. A TUTORIAL OF RECENT DEVELOPMENTS IN THE SEEDING OF LOCAL ALIGNMENT [J] . Daniel G. Brown, Ming Li, Bin Ma Journal of Bioinformatics and Computational Biology . 2004,第4期

机译：局部对准播种的最新发展课程
2. Using multiple alignments to improve seeded local alignment algorithms [J] . Jason Flannick, Serafim Batzoglou Nucleic acids research . 2005,第14期

机译：使用多重比对改善种子局部比对算法
3. Overlap digraph： An effective model for finding good spaced seeds for biological sequence local alignment [J] . CHEN Ke, SHE Kun, ZHU QingXin 中国科学通报：英文版 . 2011,第011期

机译：重叠图：寻找有效间隔的种子以进行生物序列局部比对的有效模型
4. User Alignment with Jumping Seed Alignment Information Propagation [C] . Xiang Li, Yijun Su, Neng Gao, International Joint Conference on Neural Networks . 2020

机译：用户对齐方式与跳跃式种子对齐方式信息传播
5. Role of virus genes in seed and aphid transmission and development of a virus-induced gene silencing system to study seed development in soybean. [D] . Jossey, Sushma. 2012

机译：病毒基因在种子和蚜虫传播中的作用以及研究大豆种子发育的病毒诱导基因沉默系统的开发。
6. Using multiple alignments to improve seeded local alignment algorithms [O] . Jason Flannick, Serafim Batzoglou 2005

机译：使用多重比对改善种子局部比对算法
7. A TUTORIAL OF RECENT DEVELOPMENTS IN THE SEEDING OF LOCAL ALIGNMENT [O] . DANIEL G. BROWN, MING LI, BIN MA 2004

机译：局部对准播种中最近发展的教程
8. Development of Native Seed for Sha Projects Report No. 1: Selecting Appropriate Species and Wild Collecting Their Seed. [R] . C. F. Puttock S. A. Tangren 2009

机译：沙项目原生种子研究报告第1号：选择适宜种类和野生采集种子。

A TUTORIAL OF RECENT DEVELOPMENTS IN THE SEEDING OF LOCAL ALIGNMENT

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