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Controlled vocabularies and ontologies in proteomics: Overview, principles and practice

机译:蛋白质组学中的受控词汇和本体:概述,原理和实践

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摘要

This paper focuses on the use of controlled vocabularies (CVs) and ontologies especially in the area of proteomics, primarily related to the work of the Proteomics Standards Initiative (PSI). It describes the relevant proteomics standard formats and the ontologies used within them. Software and tools for working with these ontology files are also discussed. The article also examines the "mapping files" used to ensure correct controlled vocabulary terms that are placed within PSI standards and the fulfillment of the MIAPE (Minimum Information about a Proteomics Experiment) requirements. This article is part of a Special Issue entitled: Computational Proteomics in the Post-Identification Era. Guest Editors: Martin Eisenacher and Christian Stephan.
机译:本文主要关注蛋白质组学领域中受控词汇表(CV)和本体的使用,主要涉及蛋白质组学标准倡议(PSI)的工作。它描述了相关的蛋白质组学标准格式以及其中使用的本体。还讨论了用于处理这些本体文件的软件和工具。本文还研究了“映射文件”,这些文件用于确保放置在PSI标准内的正确受控词汇和满足MIAPE(有关蛋白质组学实验的最低信息)要求。本文是名为“后识别时代的计算蛋白质组学”的特刊的一部分。客座编辑:马丁·埃塞纳赫和克里斯蒂安·斯蒂芬。

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