首页> 外文期刊>Biotechnology Letters >Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
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Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations

机译:确定稳定的管家基因,差异调控的靶基因和样品完整性:BestKeeper-基于Excel的基于成对相关的工具

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The stability of standard gene expression is an elementary prerequisite for internal standardisation of target gene expression data and many so called housekeeping genes with assumed stable expression can exhibit either up- or down-regulation under some experimental conditions. The developed, and herein presented, software called BestKeeper determines the best suited standards, out of ten candidates, and combines them into an index. The index can be compared with further ten target genes to decide, whether they are differentially expressed under an applied treatment. All data processing is based on crossing points. The BestKeeper software tool was validated on four housekeeping genes and 10 members of the somatotropic axis differentially expressed in bovine corpora lutea total RNA. The BestKeeper application and necessary information about data processing and handling can be downloaded on http://www.wzw.tum.de/gene-quantification/bestkeeper.html [References: 18]
机译:标准基因表达的稳定性是实现目标基因表达数据内部标准化的基本前提,在某些实验条件下,许多假定具有稳定表达的所谓管家基因可能会上调或下调。名为BestKeeper的已开发并在此处介绍的软件从十个候选标准中确定最适合的标准,并将其组合为索引。可以将该指数与另外十个靶基因进行比较,以决定它们是否在应用的治疗中差异表达。所有数据处理均基于交叉点。 BestKeeper软件工具已在牛体总RNA中差异表达的4个管家基因和10个生长激素轴成员上得到验证。可以在http://www.wzw.tum.de/gene-quantification/bestkeeper.html上下载BestKeeper应用程序以及有关数据处理和处理的必要信息[参考:18]

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