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Chemogenetic fingerprinting by analysis of cellular growth dynamics

机译:通过细胞生长动力学分析的化学遗传指纹

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Background: A fundamental goal in chemical biology is the elucidation of on- and off-target effectsof drugs and biocides. To this aim chemogenetic screens that quantify drug induced changes incellular fitness, typically taken as changes in composite growth, is commonly applied.Results: Using the model organism Saccharomyces cerevisiae we here report that resolving cellulargrowth dynamics into its individual components, growth lag, growth rate and growth efficiency,increases the predictive power of chemogenetic screens. Both in terms of drug-drug and gene-druginteractions did the individual growth variables capture distinct and only partially overlappingaspects of cell physiology. In fact, the impact on cellular growth dynamics represented functionallydistinct chemical fingerprints.Discussion: Our findings suggest that the resolution and quantification of all facets of growthincreases the informational and interpretational output of chemogenetic screening. Hence, byfacilitating a physiologically more complete analysis of gene-drug and drug-drug interactions thehere reported results may simplify the assignment of mode-of-action to orphan bioactivecompounds.
机译:背景:化学生物学的基本目标是阐明药物和杀生物剂的靶向作用和脱靶作用。为此目的,通常使用量化药物诱导的细胞适应性变化(通常被视为复合生长变化)的化学生成筛选。结果:使用模型生物酿酒酵母,我们在此报告将细胞生长动力学解析为其各个组成部分,生长滞后,生长速率和生长效率,提高了化学筛选的预测能力。无论是在药物-药物相互作用还是在基因-药物相互作用方面,单个生长变量都捕获了不同且仅部分重叠的细胞生理学方面。实际上,对细胞生长动力学的影响代表了功能上截然不同的化学指纹。讨论:我们的发现表明,对生长的所有方面的解析和定量都增加了化学筛选的信息和解释输出。因此,通过促进对基因-药物和药物-药物相互作用的生理上更完整的分析,本文报道的结果可以简化作用方式对孤儿生物活性化合物的分配。

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