FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

Severin J; Kawaji H; van Nimwegen E; de Hoon MJ; Carninci P; Suzuki H; Forrest AR

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FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

机译：FANTOM4 EdgeExpressDB：启动子，基因，microRNA，表达动力学和调节相互作用的集成数据库

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ABSTRACT: EdgeExpressDB is a novel database and set of interfaces for interpreting biological networks and comparing large high-throughput expression datasets that requires minimal development for new data types and search patterns. The FANTOM4 EdgeExpress database http://fantom.gsc.riken.jp/4/edgeexpress summarizes gene expression patterns in the context of alternative promoter structures and regulatory transcription factors and microRNAs using intuitive gene-centric and sub-network views. This is an important resource for gene regulation in acute myeloid leukemia, monocyte/macrophage differentiation and human transcriptional networks.

机译：摘要：EdgeExpressDB是一个新颖的数据库和一组接口，用于解释生物网络和比较大型的高通量表达数据集，而这些数据集对于新数据类型和搜索模式的开发要求最低。 FANTOM4 EdgeExpress数据库http://fantom.gsc.riken.jp/4/edgeexpress使用直观的基因中心和子网络视图，总结了在替代启动子结构和调控转录因子以及microRNA的背景下的基因表达模式。这是急性髓性白血病，单核细胞/巨噬细胞分化和人类转录网络中基因调控的重要资源。

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《Genome Biology》 |2009年第4期|共1页
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Severin J; Kawaji H; van Nimwegen E; de Hoon MJ; Carninci P; Suzuki H; Forrest AR;
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正文语种 eng
中图分类分子生物学;
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1. FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions [J] . Severin J, Kawaji H, van Nimwegen E, Genome Biology . 2009,第4期

机译：FANTOM4 EdgeExpressDB：启动子，基因，microRNA，表达动力学和调节相互作用的集成数据库
2. angaGEDUCI: Anopheles gambiae gene expression database with integrated comparative algorithms for identifying conserved DNA motifs in promoter sequences [J] . Sumudu N Dissanayake, Osvaldo Marinotti, Jose Marcos C Ribeiro, BMC Genomics . 2006,第1期

机译：angaGEDUCI：冈比亚按蚊基因表达数据库，带有集成的比较算法，用于识别启动子序列中的保守DNA基序
3. Integrated analysis of microRNA and gene expression profiles reveals a functional regulatory module associated with liver fibrosis [J] . Wei Chen, Wenshan Zhao, Aiting Yang, Gene: An International Journal Focusing on Gene Cloning and Gene Structure and Function . 2017,第期

机译：MicroRNA和基因表达谱的综合分析揭示了与肝纤维化相关的功能性调节模块
4. Tensor decomposition-based unsupervised feature extraction for integrated analysis of TCGA data on microRNA expression and promoter methylation of genes in ovarian cancer [C] . Y-h. Taguchi, Ka-Lok Ng IEEE International Conference on Bioinformatics and Bioengineering . 2018

机译：基于张量分解的无预测特征提取，用于卵巢癌中基因TCGA数据综合分析及卵巢癌基因的促进剂甲基化
5. Identification of temporal class promoters and evaluation of temporal regulatory expression of foreign gene product in the channel catfish virus vector. [D] . Huang, Suming. 1996

机译：在temporal鱼病毒载体中鉴定时间类别启动子并评估外源基因产物的时间调控表达。
6. FANTOM4 EdgeExpressDB: an integrated database of promoters genes microRNAs expression dynamics and regulatory interactions [O] . Jessica Severin, Andrew M Waterhouse, Hideya Kawaji, 2009

机译：FANTOM4 EdgeExpressDB：启动子基因microRNA表达动力学和调节相互作用的集成数据库
7. FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions [O] . 2009

机译：FANTOM4 EdgeExpressDB：启动子，基因，microRNA，表达动力学和调节相互作用的集成数据库

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

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