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Stapled peptides in the p53 pathway: computer simulations reveal novel interactions of the staples with the target protein.

机译:p53途径中的吻合肽:计算机模拟显示了吻合钉与靶蛋白的新型相互作用。

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摘要

Atomistic simulations of a set of stapled peptides derived from the transactivation domain of p53 (designed by Verdine & colleagues, JACS 2007 129:2456) and complexed to MDM2 reveal that the good binders are uniquely characterized by higher helicity and by extensive interactions between the hydrocarbon staples and the MDM2 surface; in contrast the poor binders have reduced helicity and their staples are mostly solvent exposed. Our studies also find that the best binders can also potentially inhibit MDMX with similar affinities, suggesting that such stapled peptides can be evolved for dual inhibition with therapeutic potential.
机译:对源自p53反式激活域(由Verdine和同事设计,JACS 2007 129:2456设计)并与MDM2结合的一组固定肽的原子模拟显示,良好的结合剂具有独特的特征,即较高的螺旋度和烃之间的广泛相互作用订书钉和MDM2表面;相反,不良的粘合剂降低了螺旋度,并且其订书钉大部分暴露在溶剂中。我们的研究还发现,最好的结合剂还可以潜在地以相似的亲和力抑制MDMX,这表明这种结合肽可以进化为具有治疗潜力的双重抑制作用。

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