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The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations

机译：植物本体数据库：用于植物结构和发育阶段的受控词汇和注释的社区资源

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摘要

The Plant Ontology Consortium (POC, http://www.plantontology.org) is a collaborative effort among model plant genome databases and plant researchers that aims to create, maintain and facilitate the use of a controlled vocabulary (ontology) for plants. The ontology allows users to ascribe attributes of plant structure (anatomy and morphology) and developmental stages to data types, such as genes and phenotypes, to provide a semantic framework to make meaningful cross-species and database comparisons. The POC builds upon groundbreaking work by the Gene Ontology Consortium (GOC) by adopting and extending the GOC's principles, existing software and database structure. Over the past year, POC has added hundreds of ontology terms to associate with thousands of genes and gene products from Arabidopsis, rice and maize, which are available through a newly updated web-based browser (http://www.plantontology.org/amigo/go.cgi) for viewing, searching and querying. The Consortium has also implemented new functionalities to facilitate the application of PO in genomic research and updated the website to keep the contents current. In this report, we present a brief description of resources available from the website, changes to the interfaces, data updates, community activities and future enhancement.
机译：植物本体联盟（POC，http://www.plantontology.org）是植物模型基因组数据库与植物研究人员之间的一项共同努力，旨在创建，维护和促进植物受控词汇（本体）的使用。本体允许用户将植物结构（解剖学和形态学）和发育阶段的属性归因于数据类型，例如基因和表型，以提供语义框架以进行有意义的跨物种和数据库比较。 POC通过采用和扩展GOC的原理，现有软件和数据库结构，以基因本体学联盟（GOC）的开创性工作为基础。在过去的一年中，POC添加了数百个本体术语，以与拟南芥，水稻和玉米的数千种基因和基因产物相关联，这些术语和产物可通过新近更新的基于网络的浏览器获得（http://www.plantontology.org/ amigo / go.cgi）进行查看，搜索和查询。该联盟还实施了新功能，以促进PO在基因组研究中的应用，并更新了网站以使内容保持最新。在此报告中，我们简要介绍了网站上可用的资源，界面的更改，数据更新，社区活动和未来的增强。

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