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A hybrid modeling strategy using Nuclear Overhauser Effect data with contact information

机译:使用核过度疲劳效应数据和联系信息的混合建模策略

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摘要

A hybrid modeling strategy using readily assigned Nuclear Overhauser Effect (NOE) data and main chain N-O contact information from homology template proteins is suggested. They are designed to be complementary. The strategy yields structures with reasonable root-mean square distance (RMSD) and NOE violation. When compared to homology-modeled structures, the hybrid-modeled structures are better in terms of RMSD, RMS NOE violation, and protein-like scores, although the number of used restraints is smaller than the homology modeling. The structure itself can be used as a theoretically modeled structure and also as a starting point for further NOE data assignment in structure determination.
机译:提出了一种混合建模策略,该策略使用随时分配的核过度劳累效应(NOE)数据和来自同源模板蛋白的主链N-O联系信息。它们被设计为互补的。该策略产生具有合理的均方根距离(RMSD)和违反NOE的结构。与同源性建模的结构相比,尽管使用的约束数量少于同源性建模,但在RMSD,RMS NOE违背和类似蛋白质的得分方面,混合模型结构更好。结构本身可以用作理论上建模的结构,也可以用作在结构确定中进一步分配NOE数据的起点。

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