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首页> 外文期刊>The journal of physical chemistry, B. Condensed matter, materials, surfaces, interfaces & biophysical >Performance of SM8 on a Test To Predict Small-Molecule Solvation Free Energies
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Performance of SM8 on a Test To Predict Small-Molecule Solvation Free Energies

机译:SM8在预测无小分子溶剂化自由能的测试中的性能

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The SM8 quantum mechanical aqueous continuum solvation model is applied to a 17-molecule test set proposed by Nicholls et al. (J. Med. Chem. 2008, 51, 769) to predict free energies of solvation. With the M06-2X density functional, the 6-31G(d) basis set, and CM4M charge model, the root-mean-square error (RMSE) of SM8 is 1.08 kcal mol~(-1) for aqueous geometries and 1.14 kcal mol~(-1) for gas-phase geometries. These errors compare favorably with optimal explicit and continuum models reported by Nicholls et al., having RMSEs of 1.33 and 1.87 kcal mol~(-1), respectively. Other models examined by these workers had RMSEs of 1.5-2.6 kcal mol~(-1). We also explore the use of other density functionals and charge models with SM8 and the RMSE increases to 1.21 kcal mol~(-1) for mPW1/CM4 with gas-phase geometries, to 1.50 kcal mol~(-1) for M06-2X/ CM4 with gas-phase geometries, and to 1.27-1.64 kcal mol~(-1) with three different models at B3LYP gas-phase geometries.
机译:将SM8量子机械连续水溶剂化模型应用于Nicholls等人提出的17分子测试装置。 (J. Med。Chem。2008,51,769)来预测溶剂化的自由能。利用M06-2X密度泛函,6-31G(d)基集和CM4M电荷模型,SM8的均方根误差(RMSE)对于水性几何结构为1.08 kcal mol〜(-1),而对于几何结构为1.14 kcal气相几何结构为mol〜(-1)。这些误差与Nicholls等人报道的最佳显式模型和连续模型相比较,后者的RMSE分别为1.33和1.87 kcal mol〜(-1)。这些工人检查的其他模型的RMSE为1.5-2.6 kcal mol〜(-1)。我们还探索了将其他密度泛函和电荷模型与SM8一起使用,并且将具有气相几何结构的mPW1 / CM4的RMSE增加到1.21 kcal mol〜(-1),对于M06-2X将RMSE增加到1.50 kcal mol〜(-1) / CM4具有气相几何形状,在三种不同模型下B3LYP气相几何形状达到1.27-1.64 kcal mol〜(-1)。

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